OK, I got this far:
private void addSequence() {
java.util.List<JointChannel> jointChannels = (java.util.List)sequence.getClip(0).iterator();
SkinClip clip = new SkinClip(sequence.getSkeleton(), jointChannels);
clip.setName("1");
java.util.ArrayList<SkinClip> clipList = new java.util.ArrayList<SkinClip>();
clipList.add(clip);
clip = new SkinClip(sequence.getSkeleton(), jointChannels);
clip.setName("2");
clipList.add(clip);
newSequence = new SkinClipSequence(clipList);
newSequence.addClip(clip);
}
But I still haven't given the clips proper information. Is it as simple as passing each half of the JointChannels?